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Developers · Analysis discovery

Analysis discovery

Agents should never guess what can be run. Discovery returns the supported analyses and, for each, a JSON schema for its AnalysisSpec.

Analysis discovery
GET /v1/analyses
→ ["differential_expression", "enrichment",
   "scrna_qc_clustering", "proteomics_normalization"]

GET /v1/analyses/differential_expression/schema
→ full AnalysisSpec JSON schema · versioned

MCP surface — assurance only

MCP tools
list_analysis_types
get_analysis_schema
list_assurance_profiles
validate_analysis_spec
submit_analysis · get_result
get_assurance_findings
get_evidence · verify_evidence
replay_evidence
get_sap · validate_against_sap

Deliberately narrow. Genomarker’s job is to assure computation — agents can gather scientific context elsewhere.

Actor provenance

Actor provenance JSON
{
  "actor_type": "agent",
  "interface": "mcp",
  "client": "helix-sci-agent",
  "model": "optional-identifier"
}